This is a comprehensive list of major Shinto shrines by prefectures of Japan.

Prefecture

Hokkaido

• Asahikawa Shrine
• Ebetsu Shrine
• Hokkaido Yasukuni Shrine
• Hokkaido Jingu
• Kamikawa Shrine
• Nishino Shrine
• Obihiro Shrine
• Otofuke Shrine
• Sapporo Hachimangu
• Shiraoi Hachiman Shrine
• Sumiyoshi Shrine
• Tatumaeyama Shrine

Aomori

• Kushihiki Hachimangu
• Iwakiyama Shrine
• Saruka Shrine
• Uramachi Shinmeigu
• Utou Shrine
• Yanonemori Shrine

Iwate

• Komagata Shrine
• Morioka Hachimangu

Miyagi

• Aoso Shrine
• Atago Shrine
• Furukawa Shrine
• Futahashira Shrine
• Hachiman Shrine
• Hayama Shrine
• Kamo Shrine
• Kashima Miko Shrine
• Kifuso Shrine
• Kumano Shrine
• Miyagi Gokoku Shrine
• Myojin Shrine
• Ohtakayama Shrine
• Ohkuni Shrine
• Sendai Toshogu
• Shiogama Shrine
• Shirahige Shrine
• Sumiyoshi Shrine
• Tsubonuma Hachiman Shrine
• Usa Hachiman Shrine
• Washikura Shrine
• Yakurai Shrine

Akita

• Kosio Shrine
• Sanko Kumano Shrine
  • Sanko Shrine
  • Kumano Shrine
• Tsuchizaki Shinmeisya

Yamagata

• Chokaisan Omonoimi Shrine
• Dewa Sanzan(Three Mountains of Dewa)
  • Gassan Shrine
  • Yudonosan Shrine
  • Hagurosan Shrine
• Higashimachi Kodai Shrine
• Kumano Shrine
• Torigoe Hachimangu
• Tsukioka Shrine
• Uesugi Shrine

Fukushima

• Chinju Hachiman Shrine
• Ino Hachiman
• Isasumi Shrine
• Kashima Shrine
• Kogaikuni Shrine
• Okaburaya Shrine
• Ryozen Shrine
• Sumiyoshi Shrine
• Tsutsukowake Shrine

Ibaraki

• Kasama Inari Shrine
• Kashima Jingu
• Oarai Isosaki Shrine
• Sakatsurai Isosaki Shrine
• Tokiwa Shrine
• Tsukubasan Shrine

Tochigi

• Futarasan Shrine
• Nikko Toshogu

Gunma

• Nukisashi Shrine

Saitama

• Chichibu Shrine
• Hikawa Shrine

Chiba

• Awa Shrine
• Katori Jingu
• Tamasaki Shrine

Tokyo

• Hie Shrine
• Kanda Shrine
• Meiji Shrine
• Nogi Shrine
• Okunitama Shrine
• Tokyo Daijingu
• Yasukuni Shrine
• Yushima Tenjin
• Higurashi Shrine

Kanagawa

• Enoshima Shrine
• Ooyama Aburi Shrine
• Hakone Shrine
• Samukawa Shrine
• Tsuruoka Hachimangu

Niigata

• Yahiko Shrine
• Watatsu Shrine

Toyama

• Imizu Shrine
• Oyama Shrine
• Takase Shrine

Ishikawa

• Keta Taisha
• Onominato Shrine
• Oyama Shrine
• Shirayama Hime Shrine

Fukui

• Kanasaki Gu
• Kehi Jingu

Yamanashi

• Asama Shrine
• Takeda Shrine

Nagano

• Suwa Shrine
• Togakushi Shrine

Gifu

• Inaba Shrine
• Minashi Shrine
• Nangu Taisha

Shizuoka

• Fujisan Hongu Asama Taisha
• Mishima Taisha

Aichi

• Atsuta Jingu
• Masumida Shrine
• Ogake Shrine
• Tsushima Shrine

Mie

• Ise Jingu
• Tado Taisha
• Tsubaki Great Shrine

Shiga

• Hiyoshi Taisga
• Omi Jingu
• Taga Taisha

Kyoto

• Heian Jingu
• Iwashimizu Hachimangu
• Kamo Shrine
  • Kamo Wakemikazuchi Shrine(Kamigamo Shrine)
  • Kamo Mioya Shrine(Shimogamo Shrine)
• Kibune Shrine
• Kitano Temmangu
• Kono Shrine
• Matsunoo Taisha
• Yasaka Shrine
• Yoshida Shrine

Osaka

• Hiraoka Shrine
• Ikukunitama Shrine
• Imamiya Ebisu Shrine
• Osaka Temmamgu
• Sumiyoshi Taisha

Hyogo

• Ikuta Shrine
• Izushi Shrine
• Minatogawa Shrine
• Nagata Shrine
• Nishinomiya Shrine
• Sumiyoshi Shrine

Nara

• Kashihara Jingu
• Kasuga Taisha
• Isonokami Jingu
• Oomiwa Shrine
• Tanzan Shrine
• Yoshino Jingu

Wakayama

• Kumano Three Shrines (Kumano Sanzan)
  • Kumano Hayatama Shrine
  • Kumano Hongu Shrine
  • KUmano Nachi Shrine

Tottori

• Shizuri Shrine

Shimane

• Kannbashira Shrine
• Kumano Taisha
• Izumo Taisha
• Miho Taisha
• Susa Shrine
• Yaegaki Shrine

Okayama

• Kibitsu Shrine
• Kibitsuhiko Shrine
• Shiro Shrine
• Tsurusaki Shrine
• Yuga Shrine

Hiroshima

• Fukuyama Hachimangu
• Hiroshima Gokoku Shrine
• Itsukushima Shrine
• Sakakiyama Shrine

Yamaguchi

• Akama Jingu
• Hikoshima Hachimangu
• Kameyama Hachimangu

Tokushima

• Oomahiko Shrine

Kagawa

• Kotohira Gu

Ehime

• Isaniwa Shrine
• Isono Shrine
• Izumtaisha Matsuyama Shrine
• Mishima Shrine
• Taga Shrine
• Takashihime Shrine
• Yu Shrine

Kochi

• Kochi Daijingu
• Shimosaki Shrine

Fukuoka

• Dazaifu Temmangu
• Furogu
• Hakozakigu
• Imaizu Susa Shrine
• Itouzu Hachiman Shrine
• Kashii Shrine
• Kasuga Shrine
• Kurume Suitengu
• Miyajidake Shrine
• Munakata Taisha
• Myokengu
• Sugawara Shrine
• Suitengu
• Takami Shrine
• Takasu Shrine
• Tonoe Shrine
• Umi Hachimangu

Saga

• Hoto Shrine
• Ise Shrine
• Kushidagu
• Shiga Shrine
• Sueyama Shrine
• Yutoku Inari Shrine

Nagasaki

• Sanno Shrine

Kumamoto

• Hikino Shrine
• Kato Shrine

Oita

• Komo Shrine
• Usa Jingu

Miyazaki

• Amanoiwato Shrine
• Aoshima Shrine
• Miyazaki Jingu
• Mukabaki Shrine
• Takachiho Shrine

Kagoshima

• Hirakiki Shrine
• Kirishima Shrine
• Minakata Shrine

Okinawa

• Naminouegu